Nicola K Dinsdale

I am currently working as a post-doctoral research associate in the Oxford Machine Learning in NeuroImaging Lab (OMNI), working with Dr. Ana Namburete, in the Department of Computer Science. I studied for my DPhil (PhD) in the Analysis Group at the Wellcome Centre for Integrative Neuroimaging at the University of Oxford, where I researched deep learning based approaches for neuroimaging analysis, supervised by Prof. Mark Jenkinson and Dr. Ana Namburete, funded by the UKRI EPRSC/MRC as part of the ONBI DTC.

My research uses computer vision and deep learning to solve medical imaging problems. I am especially interested in exploring methods to overcome the barriers to clinical translatability of deep learning methods and robust deep learning, and I am open to collabortion opportunities.

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Recent Highlights

UniFed: A unified deep learning framework for segmentation of partially labelled, distributed neuroimaging data
Nicola K Dinsdale, Mark Jenkinson, Ana IL Namburete
bioRxiv, 2024
Project Page / Paper / Code

We propose UniFed, a unified federated harmonisation framework, which enables three key processes to be completed: 1) the training of a federated partially labelled harmonisation network, 2) the selection of the most appropriate pretrained model for a new unseen site, and 3) the incorporation of a new site into the harmonised federation.

Anatomically plausible segmentations: Explicitly preserving topology through prior deformations
Madeleine K Wyburd, Nicola K Dinsdale , Ana IL Namburete, Mark Jenkinson
Medical Image Analysis 2024
Paper / Code

Our model, TEDS-Net, generates anatomically plausible segmentations through deforming a prior shape with the same topology as the anatomy of interest.

QAERTS: Geometric Transformation Uncertainty for Improving 3D Fetal Brain Pose Prediction from Freehand 2D Ultrasound Videos
Jayroop Ramesh, Nicola K Dinsdale, the INTERGROWTH-21st Consortium, Pak-Hei Yeung, Ana IL Namburete
MICCAI 2024 [Early Acceptance - top 11%]
Paper / Code

We propose an uncertainty-aware deep learning model for automated 3D plane localization in 2D fetal brain images.

Is Your Style Transfer Doing Anything Useful? An Investigation Into Hippocampus Segmentation and the Role of Preprocessing
Hoda Kalabizadeh, Ludovica Griffanti, Pak-Hei Yeung, Natalie Voets, Grace Gillis, Clare E Mackay, Ana IL Namburete, Nicola K Dinsdale*, Konstantinos Kamnitsas*
Machine Learning in Clinical Neuroimaging, 2024
Paper

We investigated the performance of segmentation models trained on research data that were style-transferred to resemble clinical scans. Our results highlighted the importance of intensity normalisation methods in MRI segmentation, and their relation to domain shift and style-transfer.

Research Themes

Harmonisation and Domain Adaptation
Robust Segmentation
Translating Deep Learning
Privacy Preservation
Explainable AI

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